1. Assemblies of Staphylococcus aureus (genome size 2,872,915). The best value for each column is shown in bold. For all assemblies, N50 values are based on the same genome size. The Errors column contains the number of misjoins plus indel errors >5bp for contigs, and the total number of misjoins for scaffolds. Corrected N50 values were computed after correcting contigs and scaffolds by breaking them at each error. See the evaluation section in the text for details on how errors were identified:
|
Assembler
|
Contigs |
Scaffolds |
||||||
|
Num |
N50 (kb) |
Errors |
N50 corr. (kb) |
Num |
N50 (kb) |
Errors |
N50 corr. (kb) |
|
|
ABySS |
302 |
29.2 |
19 |
24.8 |
246 |
34 |
1 |
28 |
|
Allpaths-LG |
60 |
96.7 |
20 |
66.2 |
12 |
1,092 |
0 |
1,092 |
|
Bambus2 |
109 |
50.2 |
190 |
16.7 |
17 |
1,084 |
0 |
1,084 |
|
CABOG |
Could not run: incompatible read lengths in one library |
|||||||
|
MSR-CA |
94 |
59.2 |
34 |
48.2 |
17 |
2,412 |
3 |
1,022 |
|
SGA |
1252 |
4.0 |
10 |
4.0 |
456 |
208 |
1 |
208 |
|
SOAPdenovo |
107 |
288.2 |
65 |
62.7 |
99 |
332 |
0 |
288 |
|
Velvet |
162 |
48.4 |
42 |
41.5 |
45 |
762 |
17 |
126 |