What data sets were used in GAGE?

Four different whole-genome shotgun data sets were studied, all from recent sequencing projects:

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1. Staphylococcus aureus: Data download page

   Library 1: Fragment Avg Read length: 101bp Insert length: 180bp # of reads: 1,294,104 Fastq read file 1 Fastq read file 2

   Library 2: Short jump library Avg Read length: 37bp Insert length: 3500bp # of reads: 3,494,070 Fastq read file 1 Fastq read file 2

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2. Rhodobacter sphaeroides: Data download page

   Library 1: Fragment Avg Read length: 101bp Insert length: 180bp # of reads: 2,050,868 Fastq read file 1 Fastq read file 2

   Library 2: Short jump library Avg Read length: 101bp Insert length: 3500bp # of reads: 2,050,868 Fastq read file 1 Fastq read file 2

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3. Human Chromosome 14: Data download page

   Library 1: Fragment Avg Read length: 101bp Insert length: 155bp # of reads: 36,504,800 Fastq read file 1 Fastq read file 2

   Library 2: Short jump library Avg Read length: 101bp Insert length: 2283-2803bp # of reads: 22,669,408 Fastq read file 1 Fastq read file 2

   Library 3: Long jump library Avg Read length: 76-101bp Insert length: 35,295-35,318bp # of reads: 2,405,064 Fastq read file 1 Fastq read file 2

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4. Bombus impatiens (bumblebee): Data download page

   Library 1: Fragment Avg Read length: 124bp Insert length: 400bp # of reads: 303,118,594 Fastq read file 1 Fastq read file 2

   Library 2: Short jump library 1 Avg Read length: 124bp Insert length: 3-4Kbp # of reads: 129,118,270 Fastq read file 1.1 ,1.2 Fastq read file 9.1 ,9.2

   Library 3: Short jump library 2 Avg Read length: 124bp Insert length: 8Kbp # of reads: 65,081,280 Fastq read file 1 Fastq read file 2

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